Stem-loop pny-mir-2187b

Accession

MI0035008

Description

Pundamilia nyererei pny-mir-2187b precursor miRNA

Sequence

95 reads, 8.0 reads per million, 7 experiments

UUUAAUUAGUACAGCCUGUAUUaguaaugucaucuauucUUUACAGGCUAUGCUAAUCUaugc
....(((((((.((((((((..((.((((.....)))))).)))))))).)))))))......

Structure

--UUUA       C        UU  u    u 
      AUUAGUA AGCCUGUA  ag aaug c
      ||||||| ||||||||  || |||| a
      UAAUCGU UCGGACAU  Uc uuau u
cguaUC       A        -U  -    c 

Annotation confidence Medium

Genome context

JH419453.1: 824242-824304 [-]

Mature pny-miR-2187b-5p

• Accession: MIMAT0043002
• Description: Pundamilia nyererei pny-miR-2187b-5p mature miRNA
• Sequence: 1 - UUUAAUUAGUACAGCCUGUAUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-2187b-3p

• Accession: MIMAT0060409
• Description: Pundamilia nyererei pny-miR-2187b-3p mature miRNA
• Sequence: 40 - UUUACAGGCUAUGCUAAUCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381