Stem-loop pny-mir-181a

Accession

MI0035009

Description

Pundamilia nyererei pny-mir-181a precursor miRNA

Literature search

1 open access papers mention pny-mir-181a
(2 sentences)

Sequence

18477 reads, 1400.0 reads per million, 7 experiments

CACAUUCAUCGCUGUCGGUGGGuuaguaaugccauaaaCUCGCCGGGCAAUGAAUGACA
..(((((((.(((..(((((((((.((......)).)))))))))))).)))))))...

Structure

-CA       C   GU         a  aa 
   CAUUCAU GCU  CGGUGGGuu gu  u
   ||||||| |||  ||||||||| ||   
   GUAAGUA CGG  GCCGCUCaa ua  g
ACA       A   --         a  cc 

Annotation confidence High

Genome context

JH419398.1: 320333-320391 [-]

Mature pny-miR-181a-5p

• Accession: MIMAT0043003
• Description: Pundamilia nyererei pny-miR-181a-5p mature miRNA
• Sequence: 1 - CACAUUCAUCGCUGUCGGUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-181a-3p

• Accession: MIMAT0060410
• Description: Pundamilia nyererei pny-miR-181a-3p mature miRNA
• Sequence: 39 - CUCGCCGGGCAAUGAAUGACA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381