Stem-loop pny-mir-212-2

Accession

MI0035013

Description

Pundamilia nyererei pny-mir-212-2 precursor miRNA

Sequence

828 reads, 68.0 reads per million, 7 experiments

ACCUUGGCUUUAGACUGCUUACUgcuuauacaguaucaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure

-A  U     U       C      cuua   agu 
  CC UGGCU UAGACUG UUACUg    uac   a
  || ||||| ||||||| ||||||    |||   u
  GG ACUGA AUCUGAC AAUgac    aug   c
UC  U     C       -      ----   aaa 

Annotation confidence High

Genome context

JH419559.1: 145647-145713 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-212-2

Mature pny-miR-212-2-5p

• Accession: MIMAT0060376
• Description: Pundamilia nyererei pny-miR-212-2-5p mature miRNA
• Sequence: 1 - ACCUUGGCUUUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-212-3p

• Accession: MIMAT0060414
• Description: Pundamilia nyererei pny-miR-212-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGUCAUGGCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381