Stem-loop oni-mir-454b

Accession

MI0035044

Description

Oreochromis niloticus oni-mir-454b precursor miRNA

Sequence

438103 reads, 337.0 reads per million, 105 experiments

CCCCUAUCAGUAUUGCCUCUGCUuucacuagaguuaacagagUAGUGCAAUAUUGCUUAUAGGGUCU
.(((((((((((((((..(((((((.............))))))).)))))))))...))))))...

Structure

--C      ---         CU       cacua 
   CCCUAU   CAGUAUUGC  CUGCUuu     g
   ||||||   |||||||||  |||||||     a
   GGGAUA   GUUAUAACG  GAUgaga     g
UCU      UUC         -U       caauu 

Annotation confidence High

Genome context

CM001455.1: 2080494-2080560 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-454b

Mature oni-miR-454b-5p

• Accession: MIMAT0059521
• Description: Oreochromis niloticus oni-miR-454b-5p mature miRNA
• Sequence: 1 - CCCCUAUCAGUAUUGCCUCUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-454b-3p

• Accession: MIMAT0043039
• Description: Oreochromis niloticus oni-miR-454b-3p mature miRNA
• Sequence: 43 - UAGUGCAAUAUUGCUUAUAGGGUCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774