Stem-loop oni-let-7f

Accession

MI0035046

Description

Oreochromis niloticus oni-let-7f precursor miRNA

Literature search

4 open access papers mention oni-let-7f
(17 sentences)

Sequence

4305163 reads, 4538.0 reads per million, 110 experiments

UGAGGUAGUAGAUUGUAUAGUUuuaggguagugauuuugcccucuuuaggagauaaCUAUACAAUCUAUUGCCUUCCc
.(((((((((((((((((((((..(((((((.....)))))))...........)))))))))))))))))))))...

Structure

--U                     ---------uu       u 
   GAGGUAGUAGAUUGUAUAGUU           aggguag g
   |||||||||||||||||||||           ||||||| a
   UUCCGUUAUCUAACAUAUCaa           ucccguu u
cCC                     uagaggauuuc       u 

Annotation confidence High

Genome context

CM001448.1: 2644014-2644091 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-let-7f

Mature oni-let-7f-5p

• Accession: MIMAT0043041
• Description: Oreochromis niloticus oni-let-7f-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGAUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature oni-let-7f-3p

• Accession: MIMAT0059523
• Description: Oreochromis niloticus oni-let-7f-3p mature miRNA
• Sequence: 57 - CUAUACAAUCUAUUGCCUUCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774