Stem-loop oni-mir-18a-2

Accession

MI0035049

Description

Oreochromis niloticus oni-mir-18a-2 precursor miRNA

Sequence

340570 reads, 336.0 reads per million, 105 experiments

UAAGGUGCAUCUAGUGCAGAUAGugaaauagacuagcaccuACUGCCCUAAGUGCUCCUUCUG
.((((.((((.(((.((((.(((((...........)).))))))).))).)))).))))...

Structure

--U    U    C   U    A   -  aaau 
   AAGG GCAU UAG GCAG UAG ug    a
   |||| |||| ||| |||| ||| ||    g
   UUCC CGUG AUC CGUC Auc ac    a
GUC    U    A   C    -   c  gauc 

Annotation confidence High

Genome context

CM001444.1: 7385109-7385171 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-18a-2

Mature oni-miR-18a-5p

• Accession: MIMAT0042726
• Description: Oreochromis niloticus oni-miR-18a-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAUAG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-18a-3p

• Accession: MIMAT0059404
• Description: Oreochromis niloticus oni-miR-18a-3p mature miRNA
• Sequence: 42 - ACUGCCCUAAGUGCUCCUUCUG - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774