Stem-loop oni-mir-96-3

Accession

MI0035050

Description

Oreochromis niloticus oni-mir-96-3 precursor miRNA

Literature search

1 open access papers mention oni-mir-96-3
(3 sentences)

Sequence

356645 reads, 1161.0 reads per million, 105 experiments

UUUGGCACUAGCACAUUUUUGCUuuguuucuccucuuuugagCAAUCAUGUGUAGUGCCAAUAU
.(((((((((.(((((..((((((...............))))))..))))))))))))))...

Structure

--U         G     UU      uguuuc 
   UUGGCACUA CACAU  UUGCUu      u
   ||||||||| |||||  ||||||      c
   AACCGUGAU GUGUA  AACgag      c
UAU         -     CU      uuuucu 

Annotation confidence High

Genome context

CM001450.1: 43226224-43226287 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-96-3

Mature oni-miR-96-5p

• Accession: MIMAT0042725
• Description: Oreochromis niloticus oni-miR-96-5p mature miRNA
• Sequence: 1 - UUUGGCACUAGCACAUUUUUGCU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-96-3p

• Accession: MIMAT0059403
• Description: Oreochromis niloticus oni-miR-96-3p mature miRNA
• Sequence: 43 - CAAUCAUGUGUAGUGCCAAUAU - 64
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774