Stem-loop oni-mir-10558

Accession

MI0035051

Description

Oreochromis niloticus oni-mir-10558 precursor miRNA

Sequence

6647 reads, 34.0 reads per million, 104 experiments

AUCCGUUGGGCAUCUUUCUUUGCCuuuagacaauaauucugaUGGCAAAAGAGCCAAACGGGACagg
..(((((.(((.(((((...((((.(((((.......))))).)))))))))))).)))))......

Structure

----AU     G   A     CUU    u     ca 
      CCGUU GGC UCUUU   UGCC uuaga  a
      ||||| ||| |||||   |||| |||||  u
      GGCAA CCG AGAAA   ACGG agucu  a
ggaCAG     A   -     ---    U     ua 

Annotation confidence High

Genome context

CM001446.1: 16078125-16078191 [+]

Mature oni-miR-10558-5p

• Accession: MIMAT0043045
• Description: Oreochromis niloticus oni-miR-10558-5p mature miRNA
• Sequence: 1 - AUCCGUUGGGCAUCUUUCUUUGCC - 24
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10558-3p

• Accession: MIMAT0059525
• Description: Oreochromis niloticus oni-miR-10558-3p mature miRNA
• Sequence: 43 - UGGCAAAAGAGCCAAACGGGAC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774