Stem-loop oni-mir-183-3

Accession

MI0035058

Description

Oreochromis niloticus oni-mir-183-3 precursor miRNA

Sequence

1033426 reads, 2603.0 reads per million, 105 experiments

UAUGGCACUGGUAGAAUUCACUGucacagcacacuaucagUGAAUUACCAUAGGGCCAUA
((((((..(((((..((((((((..............)))))))))))))....))))))

Structure

      --AC     GA        ucacag 
UAUGGC    UGGUA  AUUCACUG      c
||||||    |||||  ||||||||       
AUACCG    ACCAU  UAAGUgac      a
      GGAU     --        uaucac 

Annotation confidence High

Genome context

CM001450.1: 43226398-43226457 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-183-3

Mature oni-miR-183-5p

• Accession: MIMAT0042645
• Description: Oreochromis niloticus oni-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACUG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-183-3p

• Accession: MIMAT0059290
• Description: Oreochromis niloticus oni-miR-183-3p mature miRNA
• Sequence: 41 - UGAAUUACCAUAGGGCCAUA - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774