Stem-loop oni-mir-10588

Accession

MI0035066

Description

Oreochromis niloticus oni-mir-10588 precursor miRNA

Sequence

1628 reads, 2.0 reads per million, 104 experiments

UGCACAGUGUGGAUUAGUUGACUcuuguguugugcugacagaaaaacggUUAACUUGUCUCUCUGUGCUCAg
.((((((.(.((((.((((((((.((...((((....))))...)).)))))))).))))).))))))....

Structure

---U      U U    U        c  gug    g 
    GCACAG G GGAU AGUUGACU uu   uugu c
    |||||| | |||| |||||||| ||   ||||  
    CGUGUC C UCUG UCAAUUgg aa   gaca u
gACU      U -    U        c  aaa    g 

Annotation confidence High

Genome context

CM001463.1: 27704850-27704921 [+]

Mature oni-miR-10588-5p

• Accession: MIMAT0043059
• Description: Oreochromis niloticus oni-miR-10588-5p mature miRNA
• Sequence: 1 - UGCACAGUGUGGAUUAGUUGACU - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10588-3p

• Accession: MIMAT0059537
• Description: Oreochromis niloticus oni-miR-10588-3p mature miRNA
• Sequence: 50 - UUAACUUGUCUCUCUGUGCUCA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774