Stem-loop oni-mir-26c

Accession

MI0035071

Description

Oreochromis niloticus oni-mir-26c precursor miRNA

Literature search

3 open access papers mention oni-mir-26c
(5 sentences)

Sequence

30557516 reads, 20607.0 reads per million, 103 experiments

GCAAGUAAUCACGAAUAGGCCauccaggauacacacaGCCUAUCCUGGAUUACUUGAAcu
.(((((((((..(.((((((.................)))))).)..)))))))))....

Structure

---G         AC A      Cauccag 
    CAAGUAAUC  G AUAGGC       g
    |||||||||  | ||||||       a
    GUUCAUUAG  C UAUCCG       u
ucAA         GU C      acacaca 

Annotation confidence High

Genome context

CM001461.1: 4025929-4025988 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-26c

Mature oni-miR-26c-5p

• Accession: MIMAT0043064
• Description: Oreochromis niloticus oni-miR-26c-5p mature miRNA
• Sequence: 1 - GCAAGUAAUCACGAAUAGGCC - 21
• Evidence: experimental ; Illumina [1]

Mature oni-miR-26c-3p

• Accession: MIMAT0059541
• Description: Oreochromis niloticus oni-miR-26c-3p mature miRNA
• Sequence: 38 - GCCUAUCCUGGAUUACUUGAA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774