Stem-loop oni-mir-10548b

Accession

MI0035083

Description

Oreochromis niloticus oni-mir-10548b precursor miRNA

Sequence

1147 reads, 3.0 reads per million, 58 experiments

CGUGAUUGCGGAUGCUGUGCAGGugcguccgccuucccUGCACAGCACCGCAGGCCACGCCc
((((.((((((.(((((((((((.((....))....)))))))))))))))))..))))...

Structure

---    -A      A           ---u  g 
   CGUG  UUGCGG UGCUGUGCAGG    gc u
   ||||  |||||| |||||||||||    ||  
   GCAC  GACGCC ACGACACGUcc    cg c
cCC    CG      -           cuuc  c 

Annotation confidence High

Genome context

CM001449.1: 6354369-6354430 [-]

Mature oni-miR-10548b-5p

• Accession: MIMAT0043072
• Description: Oreochromis niloticus oni-miR-10548b-5p mature miRNA
• Sequence: 1 - CGUGAUUGCGGAUGCUGUGCAGG - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10548b-3p

• Accession: MIMAT0059545
• Description: Oreochromis niloticus oni-miR-10548b-3p mature miRNA
• Sequence: 39 - UGCACAGCACCGCAGGCCACGCC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774