Stem-loop oni-mir-10599

Accession

MI0035087

Description

Oreochromis niloticus oni-mir-10599 precursor miRNA

Sequence

361 reads, 1.0 reads per million, 77 experiments

AGUUGGGACUGUCAUGGAGGGCcgcaaccuuauuagaaaGGGCCUCCACAACAGUCCCAGGuc
..((((((((((..((((((.((................)).))))))..))))))))))...

Structure

-AG          CA      G  gcaaccu 
   UUGGGACUGU  UGGAGG Cc       u
   ||||||||||  |||||| ||        
   GACCCUGACA  ACCUCC GG       a
cuG          AC      G  aaagauu 

Annotation confidence Medium

Genome context

CM001448.1: 19238514-19238576 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10599

Mature oni-miR-10599-5p

• Accession: MIMAT0043075
• Description: Oreochromis niloticus oni-miR-10599-5p mature miRNA
• Sequence: 1 - AGUUGGGACUGUCAUGGAGGGC - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10599-3p

• Accession: MIMAT0059546
• Description: Oreochromis niloticus oni-miR-10599-3p mature miRNA
• Sequence: 40 - GGGCCUCCACAACAGUCCCAGG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774