Stem-loop oni-mir-199c

Accession

MI0035091

Description

Oreochromis niloticus oni-mir-199c precursor miRNA

Sequence

14853441 reads, 9879.0 reads per million, 100 experiments

AACCAAUGUGCAGACUACUGUUcagcugcagccugauGAACAGGUAGUCUGAACACUGGGcag
..(((.(((.((((((((((((((.(........).)))))).)))))))).))).)))....

Structure

--AA   A   G        -      g ugc 
    CCA UGU CAGACUAC UGUUca c   a
    ||| ||| |||||||| |||||| |    
    GGU ACA GUCUGAUG ACAAGu g   g
gacG   C   A        G      a ucc 

Annotation confidence Medium

Genome context

CM001447.1: 16325881-16325943 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-199c

Mature oni-miR-199c-5p

• Accession: MIMAT0043079
• Description: Oreochromis niloticus oni-miR-199c-5p mature miRNA
• Sequence: 1 - AACCAAUGUGCAGACUACUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-199c-3p

• Accession: MIMAT0059550
• Description: Oreochromis niloticus oni-miR-199c-3p mature miRNA
• Sequence: 38 - GAACAGGUAGUCUGAACACUGGG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774