Stem-loop oni-mir-10603a

Accession

MI0035092

Description

Oreochromis niloticus oni-mir-10603a precursor miRNA

Sequence

10016 reads, 15.0 reads per million, 105 experiments

uUAUUGUGUGGAUGCCCUAAAgggcuuccacacaauuguuuuccuguuucucuuuauucuuuauuguguggaugcccuCAAAGGGCUUCCACACUAUUGA
.....(((((((.(((((..(((((.((((((((((..........................)))))))))).)))))...))))).)))))))......

Structure

-uUAUU       U     -AA     u          uguuuuccuguu 
      GUGUGGA GCCCU   Agggc uccacacaau            u
      ||||||| |||||   ||||| ||||||||||             
      CACACCU CGGGA   ucccg agguguguua            c
AGUUAU       U     AAC     u          uuucuuauuucu 

Annotation confidence Medium

Genome context

CM001450.1: 26370924-26371023 [+]

Mature oni-miR-10603a-5p

• Accession: MIMAT0059551
• Description: Oreochromis niloticus oni-miR-10603a-5p mature miRNA
• Sequence: 2 - UAUUGUGUGGAUGCCCUAAA - 21
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10603a-3p

• Accession: MIMAT0043080
• Description: Oreochromis niloticus oni-miR-10603a-3p mature miRNA
• Sequence: 79 - CAAAGGGCUUCCACACUAUUGA - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774