Stem-loop oni-mir-728b

Accession

MI0035101

Description

Oreochromis niloticus oni-mir-728b precursor miRNA

Literature search

1 open access papers mention oni-mir-728b
(3 sentences)

Sequence

13517 reads, 14.0 reads per million, 67 experiments

AAAUGUAGUAGACUUUAAGUAUAcauguggaacuggggaguAUACUAAGUACACUACGUUUAU
(((((((((..((((..(((((((.(.(.......).).)))))))))))..)))))))))..

Structure

--         AG    UA       a g gg 
  AAAUGUAGU  ACUU  AGUAUAc u u  a
  |||||||||  ||||  ||||||| | |  a
  UUUGCAUCA  UGAA  UCAUAug g g  c
UA         CA    --       a g gu 

Annotation confidence High

Genome context

CM001452.1: 17704469-17704531 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-728b

Mature oni-miR-728b-5p

• Accession: MIMAT0043089
• Description: Oreochromis niloticus oni-miR-728b-5p mature miRNA
• Sequence: 1 - AAAUGUAGUAGACUUUAAGUAUA - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-728b-3p

• Accession: MIMAT0059560
• Description: Oreochromis niloticus oni-miR-728b-3p mature miRNA
• Sequence: 42 - AUACUAAGUACACUACGUUUAU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774