Stem-loop oni-mir-26d

Accession

MI0035107

Description

Oreochromis niloticus oni-mir-26d precursor miRNA

Literature search

3 open access papers mention oni-mir-26d
(5 sentences)

Sequence

31214261 reads, 26754.0 reads per million, 81 experiments

GCAAGUAAUCAAGCAUAGGCCAaagcagaugcagaaagCCUAUCCUGGAUUACUUGAACC
.(((((((((.((.((((((....((....)).....)))))).)).)))))))))....

Structure

---G         A  C      -CAaa  a 
    CAAGUAAUC AG AUAGGC     gc g
    ||||||||| || ||||||     ||  
    GUUCAUUAG UC UAUCCg     cg a
CCAA         G  C      aaaga  u 

Annotation confidence High

Genome context

CM001452.1: 11561754-11561813 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-26d

Mature oni-miR-26d-5p

• Accession: MIMAT0059565
• Description: Oreochromis niloticus oni-miR-26d-5p mature miRNA
• Sequence: 1 - GCAAGUAAUCAAGCAUAGGCCA - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-26d-3p

• Accession: MIMAT0043094
• Description: Oreochromis niloticus oni-miR-26d-3p mature miRNA
• Sequence: 39 - CCUAUCCUGGAUUACUUGAACC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774