Stem-loop oni-mir-6960

Accession

MI0035111

Description

Oreochromis niloticus oni-mir-6960 precursor miRNA

Sequence

1097 reads, 1.0 reads per million, 77 experiments

AAUGAUCAGGAUGAGAUGGUUUGGCuuuuuuuccacgcCGUCCACUCUCCUGUUCCCUCU
...((.(((((.(((.(((..((((...........)))).))))))))))).)).....

Structure

--AAU  U     U   A   UU    uuuu 
     GA CAGGA GAG UGG  UGGC    u
     || ||||| ||| |||  ||||    u
     CU GUCCU CUC ACC  GCcg    u
UCUCC  U     -   -   -U    cacc 

Annotation confidence High

Genome context

CM001447.1: 21012746-21012805 [+]

Mature oni-miR-6960-5p

• Accession: MIMAT0043098
• Description: Oreochromis niloticus oni-miR-6960-5p mature miRNA
• Sequence: 1 - AAUGAUCAGGAUGAGAUGGUUUGGC - 25
• Evidence: experimental ; Illumina [1]

Mature oni-miR-6960-3p

• Accession: MIMAT0059569
• Description: Oreochromis niloticus oni-miR-6960-3p mature miRNA
• Sequence: 39 - CGUCCACUCUCCUGUUCCCUCU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774