Stem-loop oni-mir-449c

Accession

MI0035130

Description

Oreochromis niloticus oni-mir-449c precursor miRNA

Sequence

604 reads, 1.0 reads per million, 49 experiments

CGGCAGUGUACUGCUGCUGGCUGUgcuauuugacugacAGCUGUCAGCUGCACUCCU
.((.((((((..((((.(((((((............))))))).)))))))))))).

Structure

C  C      CU    C       gcuau 
 GG AGUGUA  GCUG UGGCUGU     u
 || ||||||  |||| |||||||      
 CC UCACGU  CGAC GUCGAca     u
U  -      --    U       gucag 

Annotation confidence Medium

Genome context

CM001455.1: 25967331-25967387 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-449c

Mature oni-miR-449c-5p

• Accession: MIMAT0043112
• Description: Oreochromis niloticus oni-miR-449c-5p mature miRNA
• Sequence: 1 - CGGCAGUGUACUGCUGCUGGCUGU - 24
• Evidence: experimental ; Illumina [1]

Mature oni-miR-449c-3p

• Accession: MIMAT0059580
• Description: Oreochromis niloticus oni-miR-449c-3p mature miRNA
• Sequence: 39 - AGCUGUCAGCUGCACUCCU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774