Stem-loop oni-mir-10629-1

Accession

MI0035134

Description

Oreochromis niloticus oni-mir-10629-1 precursor miRNA

Sequence

11475 reads, 9.0 reads per million, 93 experiments

CCAGCACGCGCCGUGUGACCCUuuauaguagucuauaaaGGGUCACACGGCGCGUGCUGGUc
((((((((((((((((((((((((((((....))))))))))))))))))))))))))))..

Structure

--                            u 
  CCAGCACGCGCCGUGUGACCCUuuauag a
  ||||||||||||||||||||||||||||  
  GGUCGUGCGCGGCACACUGGGaaauauc g
cU                            u 

Annotation confidence Medium

Genome context

CM001457.1: 33680645-33680706 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10629-1

Mature oni-miR-10629-5p

• Accession: MIMAT0043116
• Description: Oreochromis niloticus oni-miR-10629-5p mature miRNA
• Sequence: 1 - CCAGCACGCGCCGUGUGACCCU - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10629-3p

• Accession: MIMAT0059583
• Description: Oreochromis niloticus oni-miR-10629-3p mature miRNA
• Sequence: 40 - GGGUCACACGGCGCGUGCUGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774