Stem-loop oni-mir-29d

Accession

MI0035142

Description

Oreochromis niloticus oni-mir-29d precursor miRNA

Literature search

2 open access papers mention oni-mir-29d
(10 sentences)

Sequence

2105345 reads, 2041.0 reads per million, 106 experiments

ACUGGUUUCAGAUGGUGUCUUAGAguacaaaaucccaucUAGCACCAUUUGAAAUCGGUGUU
((((((((((((((((((..((((.............))))))))))))))))))))))...

Structure

---                  CU    guaca 
   ACUGGUUUCAGAUGGUGU  UAGA     a
   ||||||||||||||||||  ||||     a
   UGGCUAAAGUUUACCACG  AUcu     a
UUG                  --    acccu 

Annotation confidence High

Genome context

CM001448.1: 29993172-29993233 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-29d

Mature oni-miR-29d-5p

• Accession: MIMAT0059586
• Description: Oreochromis niloticus oni-miR-29d-5p mature miRNA
• Sequence: 1 - ACUGGUUUCAGAUGGUGUCUUAGA - 24
• Evidence: experimental ; Illumina [1]

Mature oni-miR-29d-3p

• Accession: MIMAT0043120
• Description: Oreochromis niloticus oni-miR-29d-3p mature miRNA
• Sequence: 40 - UAGCACCAUUUGAAAUCGGUGUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774