Stem-loop oni-mir-27f

Accession

MI0035146

Description

Oreochromis niloticus oni-mir-27f precursor miRNA

Literature search

1 open access papers mention oni-mir-27f
(1 sentences)

Sequence

39323 reads, 33.0 reads per million, 88 experiments

AGAACUUAACCACUGUGAAcauggcagacacucacugUUCACAUGUGGGUUAAGUCCUG
((.(((((((((((((((((((((.......))).)))))))).)).)))))))).)).

Structure

-  A        -  -        -   ca 
 AG ACUUAACC AC UGUGAAca ugg  g
 || |||||||| || |||||||| |||  a
 UC UGAAUUGG UG ACACUUgu acu  c
G  C        G  U        c   ca 

Annotation confidence Medium

Genome context

CM001447.1: 982543-982601 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from oni-mir-27f

Mature oni-miR-27f-5p

• Accession: MIMAT0059588
• Description: Oreochromis niloticus oni-miR-27f-5p mature miRNA
• Sequence: 1 - AGAACUUAACCACUGUGAA - 19
• Evidence: experimental ; Illumina [1]

Mature oni-miR-27f-3p

• Accession: MIMAT0043124
• Description: Oreochromis niloticus oni-miR-27f-3p mature miRNA
• Sequence: 38 - UUCACAUGUGGGUUAAGUCCUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774