Stem-loop oni-mir-204b

Accession

MI0035167

Description

Oreochromis niloticus oni-mir-204b precursor miRNA

Literature search

1 open access papers mention oni-mir-204b
(1 sentences)

Sequence

3545639 reads, 2972.0 reads per million, 77 experiments

AUCCCUUUGCUGUCCCUGCCUUauccaaguuccaggCAUAGGAUGACAAAGGGAAGCC
.((((((((.(((((.(((((............)))))..))))).))))))))....

Structure

---A        C     -C     Uaucc 
    UCCCUUUG UGUCC  UGCCU     a
    |||||||| |||||  |||||      
    AGGGAAAC GUAGG  ACgga     a
CCGA        A     AU     ccuug 

Annotation confidence High

Genome context

CM001450.1: 38761818-38761875 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-204b

Mature oni-miR-204b-5p

• Accession: MIMAT0059601
• Description: Oreochromis niloticus oni-miR-204b-5p mature miRNA
• Sequence: 1 - AUCCCUUUGCUGUCCCUGCCUU - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-204b-3p

• Accession: MIMAT0043145
• Description: Oreochromis niloticus oni-miR-204b-3p mature miRNA
• Sequence: 37 - CAUAGGAUGACAAAGGGAAGCC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774