Stem-loop oni-mir-10662

Accession

MI0035178

Description

Oreochromis niloticus oni-mir-10662 precursor miRNA

Sequence

112 reads, 1.0 reads per million, 32 experiments

AAGUAGAAUAAAUCAUUUUCUGUgaucaaacugacaGAUCAAUGAUUUAGUCUCUUUG
(((.(((.(((((((((.(((((.(......).)))))..))))))))).))))))..

Structure

--   U   A         -U     g uc 
  AAG AGA UAAAUCAUU  UCUGU a  a
  ||| ||| |||||||||  ||||| |   
  UUC UCU AUUUAGUAA  AGaca u  a
GU   -   G         CU     g ca 

Annotation confidence High

Genome context

CM001444.1: 27574335-27574392 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10662

Mature oni-miR-10662-5p

• Accession: MIMAT0043156
• Description: Oreochromis niloticus oni-miR-10662-5p mature miRNA
• Sequence: 1 - AAGUAGAAUAAAUCAUUUUCUGU - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10662-3p

• Accession: MIMAT0059611
• Description: Oreochromis niloticus oni-miR-10662-3p mature miRNA
• Sequence: 37 - GAUCAAUGAUUUAGUCUCUUUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774