Stem-loop oni-mir-10666

Accession

MI0035183

Description

Oreochromis niloticus oni-mir-10666 precursor miRNA

Sequence

391 reads, 1.0 reads per million, 77 experiments

AAACGGAGCAUGAUUCAAACUCauuguggaugagugUGUUUGUUUCCUGCGCGCCUG
....((.(((.((..(((((.((((.......)))).)))))..)).)))...))..

Structure

AAAC  --A   U  UU     U    gu 
    GG   GCA GA  CAAAC Cauu  g
    ||   ||| ||  ||||| ||||  g
    CC   CGU CU  GUUUG guga  a
--GU  GCG   C  UU     U    gu 

Annotation confidence Medium

Genome context

CM001457.1: 29353546-29353602 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10666

Mature oni-miR-10666-5p

• Accession: MIMAT0043161
• Description: Oreochromis niloticus oni-miR-10666-5p mature miRNA
• Sequence: 1 - AAACGGAGCAUGAUUCAAACUC - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10666-3p

• Accession: MIMAT0059615
• Description: Oreochromis niloticus oni-miR-10666-3p mature miRNA
• Sequence: 37 - UGUUUGUUUCCUGCGCGCCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774