Stem-loop oni-mir-1788

Accession

MI0035189

Description

Oreochromis niloticus oni-mir-1788 precursor miRNA

Sequence

16566 reads, 22.0 reads per million, 63 experiments

GGCUUGUUUUAAGUUGCCUGCGaauuuuaucuguuacaCAGGCAGCUAAAGCAAGCCU
(((((((((((.((((((((.((((.......))).).))))))))))))))))))).

Structure

-           A        C -   uu 
 GGCUUGUUUUA GUUGCCUG G aau  u
 ||||||||||| |||||||| | |||  a
 CCGAACGAAAU CGACGGAC c uug  u
U           -        a a   uc 

Annotation confidence High

Genome context

CM001459.1: 29293768-29293825 [-]

Mature oni-miR-1788-5p

• Accession: MIMAT0043166
• Description: Oreochromis niloticus oni-miR-1788-5p mature miRNA
• Sequence: 1 - GGCUUGUUUUAAGUUGCCUGCG - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-1788-3p

• Accession: MIMAT0059620
• Description: Oreochromis niloticus oni-miR-1788-3p mature miRNA
• Sequence: 39 - CAGGCAGCUAAAGCAAGCCU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774