Stem-loop oni-mir-132c

Accession

MI0035200

Description

Oreochromis niloticus oni-mir-132c precursor miRNA

Literature search

1 open access papers mention oni-mir-132c
(5 sentences)

Sequence

55359 reads, 51.0 reads per million, 81 experiments

AGCCAUGACUGUAGACUGUUACUguacuuugauacuguauaagcAGUAAGCAGUCUAAAGCCAAGGUgc
.(((.((.((.((((((((((((((.................))))).))))))))).)).)).)))..

Structure

-A   A  A  G         -     acuuuga 
  GCC UG CU UAGACUGUU ACUgu       u
  ||| || || ||||||||| |||||       a
  UGG AC GA AUCUGACGA UGAcg       c
cg   A  C  A         A     aauaugu 

Annotation confidence Medium

Genome context

GL831384.1: 414692-414760 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from oni-mir-132c

Mature oni-miR-132c-5p

• Accession: MIMAT0043177
• Description: Oreochromis niloticus oni-miR-132c-5p mature miRNA
• Sequence: 1 - AGCCAUGACUGUAGACUGUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-132c-3p

• Accession: MIMAT0059627
• Description: Oreochromis niloticus oni-miR-132c-3p mature miRNA
• Sequence: 45 - AGUAAGCAGUCUAAAGCCAAGGU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774