Stem-loop oni-mir-10548c

Accession

MI0035201

Description

Oreochromis niloticus oni-mir-10548c precursor miRNA

Sequence

9817 reads, 11.0 reads per million, 94 experiments

CGUGGUCUGUGGAGCCGUGCAGguuuuguccgcccucccugcACGGCACCGCAGACCACGCCC
((((((((((((.((((((((((..............)))))))))).))))))))))))...

Structure

---            A          uuuugu 
   CGUGGUCUGUGG GCCGUGCAGg      c
   |||||||||||| ||||||||||       
   GCACCAGACGCC CGGCAcgucc      c
CCC            A          cucccg 

Annotation confidence High

Genome context

CM001464.1: 6515405-6515467 [-]

Mature oni-miR-10548c-5p

• Accession: MIMAT0059628
• Description: Oreochromis niloticus oni-miR-10548c-5p mature miRNA
• Sequence: 1 - CGUGGUCUGUGGAGCCGUGCAG - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10548c-3p

• Accession: MIMAT0043178
• Description: Oreochromis niloticus oni-miR-10548c-3p mature miRNA
• Sequence: 43 - ACGGCACCGCAGACCACGCCC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774