Stem-loop oni-mir-34b

Accession

MI0035212

Description

Oreochromis niloticus oni-mir-34b precursor miRNA

Sequence

26052 reads, 21.0 reads per million, 100 experiments

CUGGUAGUGUAGUUAGUGAUUaguguguaagaACAAUCAGCUAACGACACUGCCUaua
..((((((((.((((((((((.((........))))))).))))).))))))))....

Structure

--CU        A     -     a  gug 
    GGUAGUGU GUUAG UGAUU gu   u
    |||||||| ||||| ||||| ||    
    CCGUCACA CAAUC ACUAA CA   a
auaU        G     G     -  aga 

Annotation confidence Medium

Genome context

CM001453.1: 13229095-13229152 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-34b

Mature oni-miR-34b-5p

• Accession: MIMAT0043188
• Description: Oreochromis niloticus oni-miR-34b-5p mature miRNA
• Sequence: 1 - CUGGUAGUGUAGUUAGUGAUU - 21
• Evidence: experimental ; Illumina [1]

Mature oni-miR-34b-3p

• Accession: MIMAT0059634
• Description: Oreochromis niloticus oni-miR-34b-3p mature miRNA
• Sequence: 33 - ACAAUCAGCUAACGACACUGCCU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774