Stem-loop oni-mir-142b

Accession

MI0035248

Description

Oreochromis niloticus oni-mir-142b precursor miRNA

Literature search

1 open access papers mention oni-mir-142b
(1 sentences)

Sequence

54496 reads, 60.0 reads per million, 65 experiments

uCCAUAAAGUAGGAAACACUACAcuguggcgaggaguuuagUAGUGCUUUCUACUUUAUGGAU
(((((((((((((((.(((((((((.(.....).)))...)))))).))))))))))))))).

Structure

-               A      ---   g g 
 uCCAUAAAGUAGGAA CACUAC   Acu u g
 ||||||||||||||| ||||||   ||| | c
 AGGUAUUUCAUCUUU GUGAUg   uga g g
U               C      auu   g a 

Annotation confidence High

Genome context

GL831331.1: 273768-273830 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-142b

Mature oni-miR-142b-5p

• Accession: MIMAT0059655
• Description: Oreochromis niloticus oni-miR-142b-5p mature miRNA
• Sequence: 2 - CCAUAAAGUAGGAAACACUACA - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-142b-3p

• Accession: MIMAT0043223
• Description: Oreochromis niloticus oni-miR-142b-3p mature miRNA
• Sequence: 42 - UAGUGCUUUCUACUUUAUGGAU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774