Stem-loop oni-mir-144b

Accession

MI0035252

Description

Oreochromis niloticus oni-mir-144b precursor miRNA

Literature search

1 open access papers mention oni-mir-144b
(7 sentences)

Sequence

25465 reads, 33.0 reads per million, 71 experiments

AGUACAUCAUCUAUACUGUAGugucucuuuaauaaacUUACAGUAUAAGAUGAUAUCCUG
.....(((((((((((((((((.............)).)))))))).)))))))......

Structure

-AGUAC       -        -  gucuc 
      AUCAUCU AUACUGUA Gu     u
      ||||||| |||||||| ||     u
      UAGUAGA UAUGACAU ca     u
GUCCUA       A        U  aauaa 

Annotation confidence High

Genome context

GL831331.1: 655262-655321 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-144b

Mature oni-miR-144b-5p

• Accession: MIMAT0059657
• Description: Oreochromis niloticus oni-miR-144b-5p mature miRNA
• Sequence: 1 - AGUACAUCAUCUAUACUGUAG - 21
• Evidence: experimental ; Illumina [1]

Mature oni-miR-144b-3p

• Accession: MIMAT0043226
• Description: Oreochromis niloticus oni-miR-144b-3p mature miRNA
• Sequence: 38 - UUACAGUAUAAGAUGAUAUCCUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774