Stem-loop oni-mir-219d-1

Accession

MI0035271

Description

Oreochromis niloticus oni-mir-219d-1 precursor miRNA

Sequence

11419 reads, 15.0 reads per million, 54 experiments

AGAUGUCCAUACACAAUUCUugggguugaauaugaguuuacucaAGAAUUGCGUUUGGACAAUCAGC
.((((((((.((.(((((((((((..(((((....)))))))))))))))).)).))))).)))...

Structure

--A   -     U  A           gu     a 
   GAU GUCCA AC CAAUUCUuggg  ugaau u
   ||| ||||| || |||||||||||  |||||  
   CUA CAGGU UG GUUAAGAacuc  auuug g
CGA   A     U  C           --     a 

Annotation confidence High

Genome context

CM001450.1: 22024211-22024277 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-219d-1

Mature oni-miR-219d-1-5p

• Accession: MIMAT0059672
• Description: Oreochromis niloticus oni-miR-219d-1-5p mature miRNA
• Sequence: 1 - AGAUGUCCAUACACAAUUCU - 20
• Evidence: experimental ; Illumina [1]

Mature oni-miR-219d-3p

• Accession: MIMAT0043245
• Description: Oreochromis niloticus oni-miR-219d-3p mature miRNA
• Sequence: 45 - AGAAUUGCGUUUGGACAAUCAGC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774