Stem-loop oni-mir-132d

Accession

MI0035279

Description

Oreochromis niloticus oni-mir-132d precursor miRNA

Literature search

1 open access papers mention oni-mir-132d
(5 sentences)

Sequence

207157 reads, 185.0 reads per million, 81 experiments

ACCAUGGCUGUAGACUGUUACCauggugcuguugcuagAGUAACAAUCUAAAGCCACGGUc
(((.(((((.((((.((((((..((((......))))..)))))).)))).))))).))).

Structure

-   A     G    C      Ca    gc 
 ACC UGGCU UAGA UGUUAC  uggu  u
 ||| ||||| |||| ||||||  ||||   
 UGG ACCGA AUCU ACAAUG  aucg  g
c   C     A    A      Ag    uu 

Annotation confidence High

Genome context

GL831384.1: 415083-415143 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from oni-mir-132d

Mature oni-miR-132d-5p

• Accession: MIMAT0043253
• Description: Oreochromis niloticus oni-miR-132d-5p mature miRNA
• Sequence: 1 - ACCAUGGCUGUAGACUGUUACC - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-132d-3p

• Accession: MIMAT0059676
• Description: Oreochromis niloticus oni-miR-132d-3p mature miRNA
• Sequence: 39 - AGUAACAAUCUAAAGCCACGGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774