Stem-loop oni-mir-10780

Accession

MI0035316

Description

Oreochromis niloticus oni-mir-10780 precursor miRNA

Sequence

2438 reads, 2.0 reads per million, 90 experiments

AGAGCAGCUUUGCAUGAGUCAguuuaaaaugaaccgugACUCAUUCUGAGCUGUGAAGU
...(((((((.(.(((((((((((((...)))))..)))))))).).))))))).....

Structure

--AGA       U C        --     a 
     GCAGCUU G AUGAGUCA  guuua  
     ||||||| | ||||||||  ||||| a
     UGUCGAG C UACUCAgu  caagu  
UGAAG       U U        gc     a 

Annotation confidence High

Genome context

CM001449.1: 34631916-34631974 [+]

Mature oni-miR-10780-5p

• Accession: MIMAT0059693
• Description: Oreochromis niloticus oni-miR-10780-5p mature miRNA
• Sequence: 1 - AGAGCAGCUUUGCAUGAGUCA - 21
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10780-3p

• Accession: MIMAT0043289
• Description: Oreochromis niloticus oni-miR-10780-3p mature miRNA
• Sequence: 39 - ACUCAUUCUGAGCUGUGAAGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774