Stem-loop oni-mir-10563

Accession

MI0035340

Description

Oreochromis niloticus oni-mir-10563 precursor miRNA

Sequence

938 reads, 1.0 reads per million, 79 experiments

UGACAGGUCAUUAGAGAGAAGAuguguauuugaauuCCUCUCUUUUUUGUCCUGAUGC
...((((.((..(((((((.((.............)).)))))))..)).))))....

Structure

-UGA    U  UU       A  ugugu 
    CAGG CA  AGAGAGA GA     a
    |||| ||  ||||||| ||     u
    GUCC GU  UUUCUCU Cu     u
CGUA    U  UU       C  uaagu 

Annotation confidence High

Genome context

CM001449.1: 23578784-23578841 [+]

Mature oni-miR-10563-5p

• Accession: MIMAT0043313
• Description: Oreochromis niloticus oni-miR-10563-5p mature miRNA
• Sequence: 1 - UGACAGGUCAUUAGAGAGAAGA - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10563-3p

• Accession: MIMAT0059702
• Description: Oreochromis niloticus oni-miR-10563-3p mature miRNA
• Sequence: 37 - CCUCUCUUUUUUGUCCUGAUGC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774