miRBase entry: oni-mir-10829

Stem-loop oni-mir-10829


Accession
MI0035371
Description
Oreochromis niloticus oni-mir-10829 precursor miRNA


Sequence

140 reads, 0.0 reads per million, 35 experiments
ugcugcgcgcaucagggGCUGGAGUGGAGUGGAUAGcuucUAGGCCCGUGCAGCGCGGUCGGa
.(((((((((((..(((.(((((((..........)).))))).))))))).)))))))....

Structure
---u       -    ca   G     -  GGAG 
    gcugcgc gcau  ggg CUGGA GU    U
    ||||||| ||||  ||| ||||| ||     
    UGGCGCG CGUG  CCC GAUcu cG    G
aGGC       A    --   G     u  AUAG 


Annotation confidence Low
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Genome context
CM001462.1: 1724377-1724439 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-10829
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-10829-5p

Accession MIMAT0061082
Description Oreochromis niloticus oni-miR-10829-5p mature miRNA
Sequence 18 - GCUGGAGUGGAGUGGAUAG - 36
Evidence experimental
Illumina [1]

Mature oni-miR-10829-3p

Accession MIMAT0043342
Description Oreochromis niloticus oni-miR-10829-3p mature miRNA
Sequence 41 - UAGGCCCGUGCAGCGCGGUCGG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774