Stem-loop oni-mir-10840-1

Accession

MI0035383

Description

Oreochromis niloticus oni-mir-10840-1 precursor miRNA

Sequence

286 reads, 1.0 reads per million, 54 experiments

AAUGAGCUCAUUUUGAGAACUUaucccaauaagUUCUCAAAAUGAGCUCAUUGA
((((((((((((((((((((((((....))))))))))))))))))))))))..

Structure

--                        c 
  AAUGAGCUCAUUUUGAGAACUUau c
  ||||||||||||||||||||||||  
  UUACUCGAGUAAAACUCUUgaaua c
AG                        a 

Annotation confidence Medium

Genome context

CM001450.1: 36618212-36618265 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10840-1

Mature oni-miR-10840-5p

• Accession: MIMAT0043354
• Description: Oreochromis niloticus oni-miR-10840-5p mature miRNA
• Sequence: 1 - AAUGAGCUCAUUUUGAGAACUU - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10840-3p

• Accession: MIMAT0059717
• Description: Oreochromis niloticus oni-miR-10840-3p mature miRNA
• Sequence: 34 - UUCUCAAAAUGAGCUCAUUGA - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774