Stem-loop oni-mir-10616b

Accession

MI0035392

Description

Oreochromis niloticus oni-mir-10616b precursor miRNA

Sequence

166 reads, 0.0 reads per million, 39 experiments

AACAGCCAGUCUCUAAAACAAAggauaauauauagguuugccuuuuUGCUUUAGAGACUGGCUGUUCU
(((((((((((((((((.((((((..(((......)))..)))..))).)))))))))))))))))..

Structure

--                 A   --   au   au 
  AACAGCCAGUCUCUAAA CAA  Agg  aau  a
  ||||||||||||||||| |||  |||  |||   
  UUGUCGGUCAGAGAUUU GUu  ucc  uug  u
UC                 C   uu   gu   ga 

Annotation confidence Medium

Genome context

CM001455.1: 24779057-24779124 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10616b

Mature oni-miR-10616b-5p

• Accession: MIMAT0059721
• Description: Oreochromis niloticus oni-miR-10616b-5p mature miRNA
• Sequence: 1 - AACAGCCAGUCUCUAAAACAAA - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10616b-3p

• Accession: MIMAT0043360
• Description: Oreochromis niloticus oni-miR-10616b-3p mature miRNA
• Sequence: 47 - UGCUUUAGAGACUGGCUGUUCU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774