Stem-loop oni-mir-27c

Accession

MI0035416

Description

Oreochromis niloticus oni-mir-27c precursor miRNA

Literature search

1 open access papers mention oni-mir-27c
(1 sentences)

Sequence

4471348 reads, 5157.0 reads per million, 116 experiments

CAGGACUUAACCCACAUGUGAACAgugagugucugccaugUUCACAGUGGUUAAGUUCUG
((((((((((((.((.((((((((.((.((....))))))))))))))))))))))))))

Structure

            C  A        g  a  g 
CAGGACUUAACC AC UGUGAACA ug gu u
|||||||||||| || |||||||| || ||  
GUCUUGAAUUGG UG ACACUUgu ac cg c
            -  -        -  -  u 

Annotation confidence High

Genome context

CM001447.1: 982543-982602 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from oni-mir-27c

Mature oni-miR-27c-5p

• Accession: MIMAT0059731
• Description: Oreochromis niloticus oni-miR-27c-5p mature miRNA
• Sequence: 1 - CAGGACUUAACCCACAUGUGAACA - 24
• Evidence: experimental ; Illumina [1]

Mature oni-miR-27c-3p

• Accession: MIMAT0043380
• Description: Oreochromis niloticus oni-miR-27c-3p mature miRNA
• Sequence: 41 - UUCACAGUGGUUAAGUUCUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774