Stem-loop oni-mir-10871

Accession

MI0035430

Description

Oreochromis niloticus oni-mir-10871 precursor miRNA

Sequence

86762 reads, 732.0 reads per million, 82 experiments

aagggccuguauUUGUAUAGCGCUUUACUUAGUuccuaaggACCCCAAAGCGCUUUACAUuauauacagucaucca
..(((.((((((.((((.((((((((.....((((....))))...)))))))).))))....))))))...))).

Structure

aa   --c      ---U    U        ACUUA    c 
  ggg   cuguau    UGUA AGCGCUUU     GUuc u
  |||   ||||||    |||| ||||||||     ||||  
  ccu   gacaua    ACAU UCGCGAAA     CAgg a
-a   acu      uauU    U        --CCC    a 

Annotation confidence Medium

Genome context

CM001455.1: 31816460-31816535 [-]

Mature oni-miR-10871-5p

• Accession: MIMAT0043393
• Description: Oreochromis niloticus oni-miR-10871-5p mature miRNA
• Sequence: 13 - UUGUAUAGCGCUUUACUUAGU - 33
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10871-3p

• Accession: MIMAT0059734
• Description: Oreochromis niloticus oni-miR-10871-3p mature miRNA
• Sequence: 42 - ACCCCAAAGCGCUUUACAU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774