Stem-loop oni-mir-145

Accession

MI0035432

Description

Oreochromis niloticus oni-mir-145 precursor miRNA

Literature search

2 open access papers mention oni-mir-145
(5 sentences)

Sequence

1236058 reads, 1663.0 reads per million, 113 experiments

GUCCAGUUUUCCCAGGAAUCCCUugaccuaucagaaagggGGAUUCCUGGAAAUACUGUUCUU
...((((.((.(((((((((((((...((...))...))))))))))))).)).)))).....

Structure

--GUC    U  C             gac  a 
     CAGU UU CCAGGAAUCCCUu   cu  
     |||| || |||||||||||||   || u
     GUCA AA GGUCCUUAGGggg   ga  
UUCUU    U  A             aaa  c 

Annotation confidence High

Genome context

CM001448.1: 32184750-32184812 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-145

Mature oni-miR-145-5p

• Accession: MIMAT0043395
• Description: Oreochromis niloticus oni-miR-145-5p mature miRNA
• Sequence: 1 - GUCCAGUUUUCCCAGGAAUCCCU - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-145-3p

• Accession: MIMAT0059735
• Description: Oreochromis niloticus oni-miR-145-3p mature miRNA
• Sequence: 41 - GGAUUCCUGGAAAUACUGUUCUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774