Stem-loop oni-mir-10880

Accession

MI0035447

Description

Oreochromis niloticus oni-mir-10880 precursor miRNA

Sequence

2585 reads, 6.0 reads per million, 86 experiments

UUUUCCUCUGAUCUGCCUCCUCUcuuucaucaagaaaaccacagAGAGCAGGGCAGAGGGAGACGaa
((((((((((..(((((((.....((((.....))))......))).))))..))))))))))....

Structure

----          AU    -   -CUCUc    a 
    UUUUCCUCUG  CUGC CUC      uuuc u
    ||||||||||  |||| |||      |||| c
    AGAGGGAGAC  GACG GAg      aaag a
aaGC          GG    A   acacca    a 

Annotation confidence High

Genome context

CM001444.1: 13952956-13953022 [-]

Mature oni-miR-10880-5p

• Accession: MIMAT0043409
• Description: Oreochromis niloticus oni-miR-10880-5p mature miRNA
• Sequence: 1 - UUUUCCUCUGAUCUGCCUCCUCU - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10880-3p

• Accession: MIMAT0059739
• Description: Oreochromis niloticus oni-miR-10880-3p mature miRNA
• Sequence: 45 - AGAGCAGGGCAGAGGGAGACG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774