Stem-loop oni-mir-10889

Accession

MI0035459

Description

Oreochromis niloticus oni-mir-10889 precursor miRNA

Sequence

341 reads, 2.0 reads per million, 54 experiments

AGCUGAUCUCUUGUUUUCAUUgaagcuguuuccucucagcagCUCAGUGAGCUGGAUCAGAGCC
..(((((((...((..(((((((.((((((.......))))))))))))))).)))))))....

Structure

--AG       CUU  UU       a      uc 
    CUGAUCU   GU  UCAUUga gcuguu  c
    |||||||   ||  ||||||| ||||||  u
    GACUAGG   CG  AGUGACU Cgacga  c
CCGA       --U  --       -      cu 

Annotation confidence High

Genome context

CM001455.1: 29839053-29839116 [-]

Mature oni-miR-10889-5p

• Accession: MIMAT0059741
• Description: Oreochromis niloticus oni-miR-10889-5p mature miRNA
• Sequence: 1 - AGCUGAUCUCUUGUUUUCAUU - 21
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10889-3p

• Accession: MIMAT0043419
• Description: Oreochromis niloticus oni-miR-10889-3p mature miRNA
• Sequence: 43 - CUCAGUGAGCUGGAUCAGAGCC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774