Stem-loop oni-mir-727b

Accession

MI0035467

Description

Oreochromis niloticus oni-mir-727b precursor miRNA

Literature search

1 open access papers mention oni-mir-727b
(11 sentences)

Sequence

91488 reads, 73.0 reads per million, 105 experiments

UCAGUCUUCAGUUCCUCCCAGCccauaacuauggcagcaauguGUUGAGGCGAGUUGAAGACU
..((((((((((((..((((((.(((..((.....))..))).)))).)).))))))))))))

Structure

UC            CU  -    c   aa  a 
  AGUCUUCAGUUC  CC CAGC cau  cu u
  ||||||||||||  || |||| |||  || g
  UCAGAAGUUGAG  GG GUUG gua  ga g
--            -C  A    u   ac  c 

Annotation confidence Medium

Genome context

CM001452.1: 17708419-17708481 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-727b

Mature oni-miR-727b-5p

• Accession: MIMAT0043427
• Description: Oreochromis niloticus oni-miR-727b-5p mature miRNA
• Sequence: 1 - UCAGUCUUCAGUUCCUCCCAGC - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-727b-3p

• Accession: MIMAT0059745
• Description: Oreochromis niloticus oni-miR-727b-3p mature miRNA
• Sequence: 44 - GUUGAGGCGAGUUGAAGACU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774