Stem-loop oni-mir-34c

Accession

MI0035478

Description

Oreochromis niloticus oni-mir-34c precursor miRNA

Literature search

2 open access papers mention oni-mir-34c
(3 sentences)

Sequence

91759 reads, 69.0 reads per million, 101 experiments

UAGGCAGUGUCGUUAGCUGAUUguucuuacacacuAAUCACUAACUACACUACCAGU
..((.(((((.(((((.(((((((........)).)))))))))).))))).))...

Structure

-UA  C     C     C     -  ucu 
   GG AGUGU GUUAG UGAUU gu   u
   || ||||| ||||| ||||| ||    
   CC UCACA CAAUC ACUAA ca   a
UGA  A     U     -     u  cac 

Annotation confidence High

Genome context

CM001453.1: 13229097-13229153 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-34c

Mature oni-miR-34c-5p

• Accession: MIMAT0043438
• Description: Oreochromis niloticus oni-miR-34c-5p mature miRNA
• Sequence: 1 - UAGGCAGUGUCGUUAGCUGAUU - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-34c-3p

• Accession: MIMAT0059751
• Description: Oreochromis niloticus oni-miR-34c-3p mature miRNA
• Sequence: 36 - AAUCACUAACUACACUACCAGU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774