Stem-loop oni-mir-10597c

Accession

MI0035482

Description

Oreochromis niloticus oni-mir-10597c precursor miRNA

Sequence

1490 reads, 10.0 reads per million, 84 experiments

GAUGACUGGAUAUGUAgagcgcuuacuagaggacuaguaaggcgcuguauaaaUACAGGCCAUUUACCAUU
((((.(((..(.((((.((((((((((((....))))))).))))).)))).)..)))..)))).......

Structure

-------    -A   GA A    g     -       a 
       GAUG  CUG  U UGUA agcgc uuacuag g
       ||||  |||  | |||| ||||| |||||||  
       UUAC  GAC  a auau ucgcg aaugauc g
UUACCAU    CG   AU a    g     g       a 

Annotation confidence Medium

Genome context

CM001450.1: 12633074-12633144 [+]

Mature oni-miR-10597c-5p

• Accession: MIMAT0043441
• Description: Oreochromis niloticus oni-miR-10597c-5p mature miRNA
• Sequence: 1 - GAUGACUGGAUAUGUA - 16
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10597c-3p

• Accession: MIMAT0059752
• Description: Oreochromis niloticus oni-miR-10597c-3p mature miRNA
• Sequence: 54 - UACAGGCCAUUUACCAUU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774