Stem-loop oni-mir-3553-1

Accession

MI0035493

Description

Oreochromis niloticus oni-mir-3553-1 precursor miRNA

Sequence

461209 reads, 1140.0 reads per million, 60 experiments

AUGGCCCUAUGGUAAUUCACUGauagugugcugugacAGUGAAUUCUACCAGUGCCAUAc
(((((....(((((((((((((((((....))))..))))))))..)))))..)))))..

Structure

--     CCUA     --        --    u 
  AUGGC    UGGUA  AUUCACUG  auag g
  |||||    |||||  ||||||||  ||||  
  UACCG    ACCAU  UAAGUGAc  uguc u
cA     --UG     CU        ag    g 

Annotation confidence High

Genome context

CM001450.1: 43222526-43222585 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-3553-1

Mature oni-miR-3553-5p

• Accession: MIMAT0043450
• Description: Oreochromis niloticus oni-miR-3553-5p mature miRNA
• Sequence: 1 - AUGGCCCUAUGGUAAUUCACUG - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-3553-3p

• Accession: MIMAT0059757
• Description: Oreochromis niloticus oni-miR-3553-3p mature miRNA
• Sequence: 38 - AGUGAAUUCUACCAGUGCCAUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774