Stem-loop oni-mir-199b-3

Accession

MI0035507

Description

Oreochromis niloticus oni-mir-199b-3 precursor miRNA

Sequence

17908556 reads, 12063.0 reads per million, 99 experiments

UAACCAAUGUGCAGACUACUGUacaccaguaugacaauGAACAGGUAGUCUGAACACUGGG
...(((.(((.(((((((((((((....))))...........))))))))).))).))).

Structure

UAA   A   G         -----------    a 
   CCA UGU CAGACUACU           GUac c
   ||| ||| |||||||||           ||||  
   GGU ACA GUCUGAUGG           uaug c
--G   C   A         ACAAGuaacag    a 

Annotation confidence Medium

Genome context

GL831264.1: 905752-905812 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-199b-3

Mature oni-miR-199b-5p

• Accession: MIMAT0043142
• Description: Oreochromis niloticus oni-miR-199b-5p mature miRNA
• Sequence: 1 - UAACCAAUGUGCAGACUACUGU - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-199b-3p

• Accession: MIMAT0059598
• Description: Oreochromis niloticus oni-miR-199b-3p mature miRNA
• Sequence: 39 - GAACAGGUAGUCUGAACACUGGG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774