Stem-loop oni-mir-23d

Accession

MI0035526

Description

Oreochromis niloticus oni-mir-23d precursor miRNA

Sequence

27822 reads, 24.0 reads per million, 84 experiments

AAAUCCCUGGCAAUGUGAUucaguccucuaguuuaaaaaAAAUCACUCUGCCAGGAAUUCC
.....(((((((..((((((....................))))))..)))))))......

Structure

-AAAUC       AU      caguccucu 
      CCUGGCA  GUGAUu         a
      |||||||  ||||||          
      GGACCGU  CACUAA         g
CCUUAA       CU      Aaaaaauuu 

Annotation confidence Medium

Genome context

CM001447.1: 982334-982394 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from oni-mir-23d

Mature oni-miR-23d-5p

• Accession: MIMAT0059765
• Description: Oreochromis niloticus oni-miR-23d-5p mature miRNA
• Sequence: 1 - AAAUCCCUGGCAAUGUGAU - 19
• Evidence: experimental ; Illumina [1]

Mature oni-miR-23d-3p

• Accession: MIMAT0043480
• Description: Oreochromis niloticus oni-miR-23d-3p mature miRNA
• Sequence: 40 - AAAUCACUCUGCCAGGAAUUCC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774