miRBase entry: oni-mir-3553-3

Stem-loop oni-mir-3553-3

Accession

MI0035532

Description

Oreochromis niloticus oni-mir-3553-3 precursor miRNA

Sequence

AUGGCCCUAUGGUAAUUCACUGauagugagcucucacagugaauucuaccagugccauac
(((((....(((((((((((((..((......))..))))))))..)))))..)))))..

Structure

--     CCUA     --        au  ug 
  AUGGC    UGGUA  AUUCACUG  ag  a
  |||||    |||||  ||||||||  ||   
  uaccg    accau  uaagugac  uc  g
ca     --ug     cu        ac  uc

Annotation confidence Not enough data

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Genome context

CM001460.1: 22508403-22508462 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-3553-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-3553

Accession	MIMAT0043450
Description	Oreochromis niloticus oni-miR-3553 mature miRNA
Sequence	1 - AUGGCCCUAUGGUAAUUCACUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774