Stem-loop oni-mir-3553-3

Accession

MI0035532

Description

Oreochromis niloticus oni-mir-3553-3 precursor miRNA

Sequence

462433 reads, 1167.0 reads per million, 58 experiments

AUGGCCCUAUGGUAAUUCACUGauagugagcucucacAGUGAAUUCUACCAGUGCCAUAc
(((((....(((((((((((((..((......))..))))))))..)))))..)))))..

Structure

--     CCUA     --        au  ug 
  AUGGC    UGGUA  AUUCACUG  ag  a
  |||||    |||||  ||||||||  ||   
  UACCG    ACCAU  UAAGUGAc  uc  g
cA     --UG     CU        ac  uc 

Annotation confidence High

Genome context

CM001460.1: 22508403-22508462 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-3553-3

Mature oni-miR-3553-5p

• Accession: MIMAT0043450
• Description: Oreochromis niloticus oni-miR-3553-5p mature miRNA
• Sequence: 1 - AUGGCCCUAUGGUAAUUCACUG - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-3553-3p

• Accession: MIMAT0059757
• Description: Oreochromis niloticus oni-miR-3553-3p mature miRNA
• Sequence: 38 - AGUGAAUUCUACCAGUGCCAUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774